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javadoc for jalview_properties tags
[jalview.git]
/
src
/
jalview
/
appletgui
/
AlignViewport.java
diff --git
a/src/jalview/appletgui/AlignViewport.java
b/src/jalview/appletgui/AlignViewport.java
index
e5551e2
..
3418270
100755
(executable)
--- a/
src/jalview/appletgui/AlignViewport.java
+++ b/
src/jalview/appletgui/AlignViewport.java
@@
-210,12
+210,12
@@
public class AlignViewport
AlignmentAnnotation.BAR_GRAPH);
conservation.hasText = true;
conservation.autoCalculated = true;
AlignmentAnnotation.BAR_GRAPH);
conservation.hasText = true;
conservation.autoCalculated = true;
-
+
if (showConservation)
{
alignment.addAnnotation(conservation);
}
if (showConservation)
{
alignment.addAnnotation(conservation);
}
-
+
if (showQuality)
{
quality = new AlignmentAnnotation("Quality",
if (showQuality)
{
quality = new AlignmentAnnotation("Quality",
@@
-226,11
+226,11
@@
public class AlignViewport
AlignmentAnnotation.BAR_GRAPH);
quality.hasText = true;
quality.autoCalculated = true;
AlignmentAnnotation.BAR_GRAPH);
quality.hasText = true;
quality.autoCalculated = true;
-
+
alignment.addAnnotation(quality);
}
}
alignment.addAnnotation(quality);
}
}
-
+
consensus = new AlignmentAnnotation("Consensus", "PID",
new Annotation[1], 0f, 100f,
AlignmentAnnotation.BAR_GRAPH);
consensus = new AlignmentAnnotation("Consensus", "PID",
new Annotation[1], 0f, 100f,
AlignmentAnnotation.BAR_GRAPH);
@@
-242,7
+242,7
@@
public class AlignViewport
alignment.addAnnotation(consensus);
}
}
alignment.addAnnotation(consensus);
}
}
-
+
}
public void showSequenceFeatures(boolean b)
}
public void showSequenceFeatures(boolean b)
@@
-276,7
+276,7
@@
public class AlignViewport
{
if (ap != null)
{
{
if (ap != null)
{
- ap.paintAlignment(true);
+ ap.paintAlignment(false);
}
Thread.sleep(200);
}
}
Thread.sleep(200);
}
@@
-454,7
+454,7
@@
public class AlignViewport
{
if (ap != null)
{
{
if (ap != null)
{
- ap.paintAlignment(true);
+ ap.paintAlignment(false);
}
Thread.sleep(200);
}
Thread.sleep(200);