+ public void hideRepSequences(SequenceI repSequence, SequenceGroup sg)\r
+ {\r
+ int sSize = sg.getSize();\r
+ if (sSize < 2)\r
+ {\r
+ return;\r
+ }\r
+\r
+ if (hiddenRepSequences == null)\r
+ {\r
+ hiddenRepSequences = new Hashtable();\r
+ }\r
+\r
+ hiddenRepSequences.put(repSequence, sg);\r
+\r
+ //Hide all sequences except the repSequence\r
+ SequenceI[] seqs = new SequenceI[sSize - 1];\r
+ int index = 0;\r
+ for (int i = 0; i < sSize; i++)\r
+ {\r
+ if (sg.getSequenceAt(i) != repSequence)\r
+ {\r
+ if (index == sSize - 1)\r
+ {\r
+ return;\r
+ }\r
+\r
+ seqs[index++] = sg.getSequenceAt(i);\r
+ }\r
+ }\r
+\r
+ hideSequence(seqs);\r
+\r
+ }\r
+\r