+ public void hideRepSequences(SequenceI repSequence, SequenceGroup sg)\r
+ {\r
+ int sSize = sg.getSize();\r
+ if(sSize < 2)\r
+ return;\r
+\r
+ if(hiddenRepSequences==null)\r
+ hiddenRepSequences = new Hashtable();\r
+\r
+ hiddenRepSequences.put(repSequence, sg);\r
+\r
+ //Hide all sequences except the repSequence\r
+ SequenceI [] seqs = new SequenceI[sSize-1];\r
+ int index = 0;\r
+ for(int i=0; i<sSize; i++)\r
+ if(sg.getSequenceAt(i)!=repSequence)\r
+ {\r
+ if(index==sSize-1)\r
+ return;\r
+\r
+ seqs[index++] = sg.getSequenceAt(i);\r
+ }\r
+\r
+ hideSequence(seqs);\r
+\r
+ }\r
+\r