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ensure lastSeq is refreshed if new feature added
[jalview.git]
/
src
/
jalview
/
appletgui
/
AlignViewport.java
diff --git
a/src/jalview/appletgui/AlignViewport.java
b/src/jalview/appletgui/AlignViewport.java
index
40d67b0
..
ad7113a
100755
(executable)
--- a/
src/jalview/appletgui/AlignViewport.java
+++ b/
src/jalview/appletgui/AlignViewport.java
@@
-296,7
+296,7
@@
public class AlignViewport
cons.findQuality();
\r
}
\r
\r
cons.findQuality();
\r
}
\r
\r
- String sequence = cons.getConsSequence().getSequence();
\r
+ char [] sequence = cons.getConsSequence().getSequence();
\r
float minR;
\r
float minG;
\r
float minB;
\r
float minR;
\r
float minG;
\r
float minB;
\r
@@
-331,7
+331,7
@@
public class AlignViewport
{
\r
float value = 0;
\r
\r
{
\r
float value = 0;
\r
\r
- c = sequence.charAt(i);
\r
+ c = sequence[i];
\r
\r
if (Character.isDigit(c))
\r
value = (int) (c - '0');
\r
\r
if (Character.isDigit(c))
\r
value = (int) (c - '0');
\r
@@
-1201,7
+1201,7
@@
public class AlignViewport
}
\r
else
\r
{
\r
}
\r
else
\r
{
\r
- selection[i] = seqs[i].getSequence(start, end);
\r
+ selection[i] = seqs[i].getSequenceAsString(start, end);
\r
}
\r
}
\r
\r
}
\r
}
\r
\r