+ /**
+ * show non-conserved residues only
+ */
+ public boolean showUnconserved=false;
+
+ /**
+ * when set, alignment should be reordered according to a newly opened tree
+ */
+ public boolean sortByTree=false;
+
+ /**
+ * @return the showUnconserved
+ */
+ public boolean getShowunconserved()
+ {
+ return showUnconserved;
+ }
+
+ /**
+ * @param showUnconserved the showUnconserved to set
+ */
+ public void setShowunconserved(boolean displayNonconserved)
+ {
+ this.showUnconserved = displayNonconserved;
+ }