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Merge branch 'features/JAL-2376_add-horizontal-bar' into develop
[jalview.git]
/
src
/
jalview
/
appletgui
/
AnnotationColumnChooser.java
diff --git
a/src/jalview/appletgui/AnnotationColumnChooser.java
b/src/jalview/appletgui/AnnotationColumnChooser.java
index
25ff293
..
60775d3
100644
(file)
--- a/
src/jalview/appletgui/AnnotationColumnChooser.java
+++ b/
src/jalview/appletgui/AnnotationColumnChooser.java
@@
-21,7
+21,7
@@
package jalview.appletgui;
import jalview.datamodel.AlignmentAnnotation;
package jalview.appletgui;
import jalview.datamodel.AlignmentAnnotation;
-import jalview.datamodel.ColumnSelection;
+import jalview.datamodel.HiddenColumns;
import jalview.schemes.AnnotationColourGradient;
import jalview.util.MessageManager;
import jalview.viewmodel.annotationfilter.AnnotationFilterParameter;
import jalview.schemes.AnnotationColourGradient;
import jalview.util.MessageManager;
import jalview.viewmodel.annotationfilter.AnnotationFilterParameter;
@@
-110,7
+110,7
@@
public class AnnotationColumnChooser extends AnnotationRowFilter implements
private int actionOption = ACTION_OPTION_SELECT;
private int actionOption = ACTION_OPTION_SELECT;
- private ColumnSelection oldColumnSelection;
+ private HiddenColumns oldHiddenColumns;
public AnnotationColumnChooser()
{
public AnnotationColumnChooser()
{
@@
-140,7
+140,7
@@
public class AnnotationColumnChooser extends AnnotationRowFilter implements
{
return;
}
{
return;
}
- setOldColumnSelection(av.getColumnSelection());
+ setOldHiddenColumns(av.getAlignment().getHiddenColumns());
adjusting = true;
Vector<String> list = new Vector<String>();
int index = 1;
adjusting = true;
Vector<String> list = new Vector<String>();
int index = 1;
@@
-289,26
+289,26
@@
public class AnnotationColumnChooser extends AnnotationRowFilter implements
@SuppressWarnings("unchecked")
public void reset()
{
@SuppressWarnings("unchecked")
public void reset()
{
- if (this.getOldColumnSelection() != null)
+ if (this.getOldHiddenColumns() != null)
{
av.getColumnSelection().clear();
if (av.getAnnotationColumnSelectionState() != null)
{
{
av.getColumnSelection().clear();
if (av.getAnnotationColumnSelectionState() != null)
{
- ColumnSelection oldSelection = av
+ HiddenColumns oldHidden = av
.getAnnotationColumnSelectionState()
.getAnnotationColumnSelectionState()
- .getOldColumnSelection();
- if (oldSelection != null && oldSelection.getHiddenColumns() != null
- && !oldSelection.getHiddenColumns().isEmpty())
+ .getOldHiddenColumns();
+ if (oldHidden != null && oldHidden.getHiddenRegions() != null
+ && !oldHidden.getHiddenRegions().isEmpty())
{
{
- for (Iterator<int[]> itr = oldSelection.getHiddenColumns()
+ for (Iterator<int[]> itr = oldHidden.getHiddenRegions()
.iterator(); itr.hasNext();)
{
int positions[] = itr.next();
av.hideColumns(positions[0], positions[1]);
}
}
.iterator(); itr.hasNext();)
{
int positions[] = itr.next();
av.hideColumns(positions[0], positions[1]);
}
}
- av.setColumnSelection(oldSelection);
+ av.getAlignment().setHiddenColumns(oldHidden);
}
ap.paintAlignment(true);
}
}
ap.paintAlignment(true);
}
@@
-518,16
+518,16
@@
public class AnnotationColumnChooser extends AnnotationRowFilter implements
ap.paintAlignment(true);
}
ap.paintAlignment(true);
}
- public ColumnSelection getOldColumnSelection()
+ public HiddenColumns getOldHiddenColumns()
{
{
- return oldColumnSelection;
+ return oldHiddenColumns;
}
}
- public void setOldColumnSelection(ColumnSelection currentColumnSelection)
+ public void setOldHiddenColumns(HiddenColumns currentHiddenColumns)
{
{
- if (currentColumnSelection != null)
+ if (currentHiddenColumns != null)
{
{
- this.oldColumnSelection = new ColumnSelection(currentColumnSelection);
+ this.oldHiddenColumns = new HiddenColumns(currentHiddenColumns);
}
}
}
}