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JAL-2616 add ability to change location of family and hmm data
[jalview.git]
/
src
/
jalview
/
appletgui
/
AnnotationLabels.java
diff --git
a/src/jalview/appletgui/AnnotationLabels.java
b/src/jalview/appletgui/AnnotationLabels.java
index
b28ccc7
..
307301d
100755
(executable)
--- a/
src/jalview/appletgui/AnnotationLabels.java
+++ b/
src/jalview/appletgui/AnnotationLabels.java
@@
-339,7
+339,8
@@
public class AnnotationLabels extends Panel implements ActionListener,
av.calcPanelHeight());
f.height += dif;
ap.seqPanelHolder.setPreferredSize(f);
av.calcPanelHeight());
f.height += dif;
ap.seqPanelHolder.setPreferredSize(f);
- ap.setScrollValues(av.getStartRes(), av.getStartSeq());
+ ap.setScrollValues(av.getRanges().getStartRes(), av.getRanges()
+ .getStartSeq());
ap.validate();
// ap.paintAlignment(true);
ap.addNotify();
ap.validate();
// ap.paintAlignment(true);
ap.addNotify();
@@
-838,7
+839,8
@@
public class AnnotationLabels extends Panel implements ActionListener,
if (av.hasHiddenColumns())
{
jalview.appletgui.AlignFrame.copiedHiddenColumns = new Vector();
if (av.hasHiddenColumns())
{
jalview.appletgui.AlignFrame.copiedHiddenColumns = new Vector();
- for (int[] region : av.getColumnSelection().getHiddenColumns())
+ for (int[] region : av.getAlignment().getHiddenColumns()
+ .getHiddenRegions())
{
jalview.appletgui.AlignFrame.copiedHiddenColumns
.addElement(new int[] { region[0], region[1] });
{
jalview.appletgui.AlignFrame.copiedHiddenColumns
.addElement(new int[] { region[0], region[1] });