+\r
+ if (aa[selectedRow].label.equals("Consensus"))\r
+ {\r
+ pop.addSeparator();\r
+ final CheckboxMenuItem cbmi = new CheckboxMenuItem(\r
+ "Ignore Gaps In Consensus",\r
+ ap.av.getIgnoreGapsConsensus());\r
+\r
+ cbmi.addItemListener(new ItemListener()\r
+ {\r
+ public void itemStateChanged(ItemEvent e)\r
+ {\r
+ ap.av.setIgnoreGapsConsensus(cbmi.getState());\r
+ ap.repaint();\r
+ }\r
+ });\r
+ pop.add(cbmi);\r
+ }\r
+\r
+ pop.show(this, evt.getX(), evt.getY());\r