.setMapping(seq, chains, pdbentry.getFile(), protocol);
// PROMPT USER HERE TO ADD TO NEW OR EXISTING VIEW?
// FOR NOW, LETS JUST OPEN A NEW WINDOW
.setMapping(seq, chains, pdbentry.getFile(), protocol);
// PROMPT USER HERE TO ADD TO NEW OR EXISTING VIEW?
// FOR NOW, LETS JUST OPEN A NEW WINDOW
hydro.addActionListener(this);
chain.addActionListener(this);
seqColour.addItemListener(this);
hydro.addActionListener(this);
chain.addActionListener(this);
seqColour.addItemListener(this);
zappo.addActionListener(this);
taylor.addActionListener(this);
helix.addActionListener(this);
zappo.addActionListener(this);
taylor.addActionListener(this);
helix.addActionListener(this);
turn.addActionListener(this);
buried.addActionListener(this);
user.addActionListener(this);
turn.addActionListener(this);
buried.addActionListener(this);
user.addActionListener(this);
seqColour.setState(itm == seqColour);
jmb.setColourBySequence(itm == seqColour);
}
public void itemStateChanged(ItemEvent evt)
{
seqColour.setState(itm == seqColour);
jmb.setColourBySequence(itm == seqColour);
}
public void itemStateChanged(ItemEvent evt)
{
+
+ public AlignmentPanel getAlignmentPanelFor(AlignmentI alignment)
+ {
+ for (int i=0;i<_aps.size();i++)
+ {
+ if (((AlignmentPanel)_aps.get(i)).av.getAlignment()==alignment)
+ {
+ return ((AlignmentPanel)_aps.get(i));
+ }
+ }
+ return ap;
+ }