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JAL-3148 show/hide features on structure independent of alignment
[jalview.git]
/
src
/
jalview
/
appletgui
/
AppletJmol.java
diff --git
a/src/jalview/appletgui/AppletJmol.java
b/src/jalview/appletgui/AppletJmol.java
index
22c467d
..
681fc7d
100644
(file)
--- a/
src/jalview/appletgui/AppletJmol.java
+++ b/
src/jalview/appletgui/AppletJmol.java
@@
-528,7
+528,7
@@
public class AppletJmol extends EmbmenuFrame implements
private void setColourScheme(ColourSchemeI cs)
{
private void setColourScheme(ColourSchemeI cs)
{
- jmb.setJalviewColourScheme(cs, ap);
+ jmb.setJalviewColourScheme(cs, ap, ap.av.isShowSequenceFeatures());
}
/**
}
/**
@@
-555,7
+555,7
@@
public class AppletJmol extends EmbmenuFrame implements
else if (evt.getSource() == seqColour)
{
setEnabled(seqColour);
else if (evt.getSource() == seqColour)
{
setEnabled(seqColour);
- jmb.colourBySequence(ap);
+ jmb.colourBySequence(ap, ap.av.isShowSequenceFeatures());
}
else if (!allChainsSelected)
{
}
else if (!allChainsSelected)
{
@@
-588,7
+588,7
@@
public class AppletJmol extends EmbmenuFrame implements
public void updateColours(Object source)
{
AlignmentPanel panel = (AlignmentPanel) source;
public void updateColours(Object source)
{
AlignmentPanel panel = (AlignmentPanel) source;
- jmb.colourBySequence(panel);
+ jmb.colourBySequence(panel, ap.av.isShowSequenceFeatures());
}
public void updateTitleAndMenus()
}
public void updateTitleAndMenus()
@@
-599,7
+599,7
@@
public class AppletJmol extends EmbmenuFrame implements
return;
}
setChainMenuItems(jmb.getChainNames());
return;
}
setChainMenuItems(jmb.getChainNames());
- jmb.colourBySequence(ap);
+ jmb.colourBySequence(ap, ap.av.isShowSequenceFeatures());
setTitle(jmb.getViewerTitle());
}
setTitle(jmb.getViewerTitle());
}