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JAL-4390 don't output alignment to text panel and stdout when lots of sequences proce...
[jalview.git]
/
src
/
jalview
/
appletgui
/
AppletJmol.java
diff --git
a/src/jalview/appletgui/AppletJmol.java
b/src/jalview/appletgui/AppletJmol.java
index
6e95633
..
b0722c0
100644
(file)
--- a/
src/jalview/appletgui/AppletJmol.java
+++ b/
src/jalview/appletgui/AppletJmol.java
@@
-104,16
+104,16
@@
public class AppletJmol extends EmbmenuFrame implements
MessageManager.getString("label.colourScheme_hydrophobic"));
MenuItem helix = new MenuItem(
MessageManager.getString("label.colourScheme_hydrophobic"));
MenuItem helix = new MenuItem(
- MessageManager.getString("label.colourScheme_helix_propensity"));
+ MessageManager.getString("label.colourScheme_helixpropensity"));
MenuItem strand = new MenuItem(
MenuItem strand = new MenuItem(
- MessageManager.getString("label.colourScheme_strand_propensity"));
+ MessageManager.getString("label.colourScheme_strandpropensity"));
MenuItem turn = new MenuItem(
MenuItem turn = new MenuItem(
- MessageManager.getString("label.colourScheme_turn_propensity"));
+ MessageManager.getString("label.colourScheme_turnpropensity"));
MenuItem buried = new MenuItem(
MenuItem buried = new MenuItem(
- MessageManager.getString("label.colourScheme_buried_index"));
+ MessageManager.getString("label.colourScheme_buriedindex"));
MenuItem purinepyrimidine = new MenuItem(
MessageManager.getString("label.colourScheme_purine/pyrimidine"));
MenuItem purinepyrimidine = new MenuItem(
MessageManager.getString("label.colourScheme_purine/pyrimidine"));
@@
-135,7
+135,7
@@
public class AppletJmol extends EmbmenuFrame implements
AlignmentPanel ap;
List<AlignmentPanel> _aps = new ArrayList<>(); // remove? never
AlignmentPanel ap;
List<AlignmentPanel> _aps = new ArrayList<>(); // remove? never
- // added to
+ // added to
String fileLoadingError;
String fileLoadingError;
@@
-335,7
+335,7
@@
public class AppletJmol extends EmbmenuFrame implements
}
FileParse fp = new FileParse(pdbentry.getFile(), protocol);
fp.mark();
}
FileParse fp = new FileParse(pdbentry.getFile(), protocol);
fp.mark();
- // reader = new MCview.PDBfile(fp);
+ // reader = new mc_view.PDBfile(fp);
// could set ID, etc.
// if (!reader.isValid())
// {
// could set ID, etc.
// if (!reader.isValid())
// {