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JAL-3148 show/hide features on structure independent of alignment
[jalview.git]
/
src
/
jalview
/
appletgui
/
AppletJmolBinding.java
diff --git
a/src/jalview/appletgui/AppletJmolBinding.java
b/src/jalview/appletgui/AppletJmolBinding.java
index
d5d53fb
..
696a272
100644
(file)
--- a/
src/jalview/appletgui/AppletJmolBinding.java
+++ b/
src/jalview/appletgui/AppletJmolBinding.java
@@
-24,6
+24,7
@@
import jalview.api.AlignmentViewPanel;
import jalview.datamodel.PDBEntry;
import jalview.datamodel.SequenceI;
import jalview.ext.jmol.JalviewJmolBinding;
import jalview.datamodel.PDBEntry;
import jalview.datamodel.SequenceI;
import jalview.ext.jmol.JalviewJmolBinding;
+import jalview.gui.IProgressIndicator;
import jalview.io.DataSourceType;
import jalview.structure.StructureSelectionManager;
import jalview.io.DataSourceType;
import jalview.structure.StructureSelectionManager;
@@
-58,13
+59,6
@@
class AppletJmolBinding extends JalviewJmolBinding
}
@Override
}
@Override
- public jalview.api.SequenceRenderer getSequenceRenderer(
- AlignmentViewPanel alignment)
- {
- return new SequenceRenderer(((AlignmentPanel) alignment).av);
- }
-
- @Override
public void sendConsoleEcho(String strEcho)
{
if (appletJmolBinding.scriptWindow == null)
public void sendConsoleEcho(String strEcho)
{
if (appletJmolBinding.scriptWindow == null)
@@
-102,7
+96,7
@@
class AppletJmolBinding extends JalviewJmolBinding
public void updateColours(Object source)
{
AlignmentPanel ap = (AlignmentPanel) source;
public void updateColours(Object source)
{
AlignmentPanel ap = (AlignmentPanel) source;
- colourBySequence(ap);
+ colourBySequence(ap, ap.av.isShowSequenceFeatures());
}
@Override
}
@Override
@@
-183,4
+177,11
@@
class AppletJmolBinding extends JalviewJmolBinding
// TODO Auto-generated method stub
return null;
}
// TODO Auto-generated method stub
return null;
}
+
+ @Override
+ protected IProgressIndicator getIProgressIndicator()
+ {
+ // no progress indicators on the applet
+ return null;
+ }
}
}