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JAL-2388 Comment typo
[jalview.git]
/
src
/
jalview
/
appletgui
/
ExtJmol.java
diff --git
a/src/jalview/appletgui/ExtJmol.java
b/src/jalview/appletgui/ExtJmol.java
index
6479296
..
189fe88
100644
(file)
--- a/
src/jalview/appletgui/ExtJmol.java
+++ b/
src/jalview/appletgui/ExtJmol.java
@@
-1,6
+1,6
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
- * Copyright (C) 2015 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
*
* This file is part of Jalview.
*
*
* This file is part of Jalview.
*
@@
-26,6
+26,7
@@
import jalview.api.SequenceRenderer;
import jalview.datamodel.PDBEntry;
import jalview.datamodel.SequenceI;
import jalview.ext.jmol.JalviewJmolBinding;
import jalview.datamodel.PDBEntry;
import jalview.datamodel.SequenceI;
import jalview.ext.jmol.JalviewJmolBinding;
+import jalview.io.DataSourceType;
import java.awt.Container;
import java.util.ArrayList;
import java.awt.Container;
import java.util.ArrayList;
@@
-48,12
+49,12
@@
public class ExtJmol extends JalviewJmolBinding
private AlignmentPanel ap;
private AlignmentPanel ap;
- protected ExtJmol(jalview.appletgui.AlignFrame alframe,
- PDBEntry[] pdbentry, SequenceI[][] seq, String[][] chains,
- String protocol)
+ protected ExtJmol(AlignFrame alframe,
+ PDBEntry[] pdbentry, SequenceI[][] seq,
+ DataSourceType protocol)
{
super(alframe.alignPanel.getStructureSelectionManager(), pdbentry, seq,
{
super(alframe.alignPanel.getStructureSelectionManager(), pdbentry, seq,
- chains, protocol);
+ protocol);
}
public ExtJmol(Viewer viewer, AlignmentPanel alignPanel,
}
public ExtJmol(Viewer viewer, AlignmentPanel alignPanel,
@@
-64,6
+65,7
@@
public class ExtJmol extends JalviewJmolBinding
notifyFileLoaded(null, null, null, null, 0);
}
notifyFileLoaded(null, null, null, null, 0);
}
+ @Override
public void updateColours(Object source)
{
public void updateColours(Object source)
{
@@
-71,6
+73,7
@@
public class ExtJmol extends JalviewJmolBinding
}
}
+ @Override
public void showUrl(String arg0)
{
showUrl(arg0, "jmol");
public void showUrl(String arg0)
{
showUrl(arg0, "jmol");
@@
-126,6
+129,7
@@
public class ExtJmol extends JalviewJmolBinding
// ignore
}
// ignore
}
+ @Override
public void selectionChanged(BS arg0)
{
System.out.println(arg0);
public void selectionChanged(BS arg0)
{
System.out.println(arg0);