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JAL-2388 Make startRes,startSeq,endRes,endSeq private with get/setters
[jalview.git]
/
src
/
jalview
/
appletgui
/
OverviewPanel.java
diff --git
a/src/jalview/appletgui/OverviewPanel.java
b/src/jalview/appletgui/OverviewPanel.java
index
1b6df1d
..
0d3f058
100755
(executable)
--- a/
src/jalview/appletgui/OverviewPanel.java
+++ b/
src/jalview/appletgui/OverviewPanel.java
@@
-253,7
+253,6
@@
public class OverviewPanel extends Panel implements Runnable,
if ((int) (row * sampleRow) == lastrow)
{
sameRow++;
if ((int) (row * sampleRow) == lastrow)
{
sameRow++;
- continue;
}
else
{
}
else
{
@@
-261,10
+260,13
@@
public class OverviewPanel extends Panel implements Runnable,
hiddenRow = false;
if (hasHiddenRows)
{
hiddenRow = false;
if (hasHiddenRows)
{
+ // look for sequence in hidden rows
seq = av.getAlignment().getHiddenSequences()
.getHiddenSequence(lastrow);
if (seq == null)
{
seq = av.getAlignment().getHiddenSequences()
.getHiddenSequence(lastrow);
if (seq == null)
{
+ // didn't find in hidden rows, adjust the index and retrieve from
+ // full row set
int index = av.getAlignment().getHiddenSequences()
.findIndexWithoutHiddenSeqs(lastrow);
int index = av.getAlignment().getHiddenSequences()
.findIndexWithoutHiddenSeqs(lastrow);
@@
-272,6
+274,7
@@
public class OverviewPanel extends Panel implements Runnable,
}
else
{
}
else
{
+ // found in hidden rows, ergo this row is hidden
hiddenRow = true;
}
}
hiddenRow = true;
}
}