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Merge remote-tracking branch 'origin/develop' into
[jalview.git]
/
src
/
jalview
/
appletgui
/
PCAPanel.java
diff --git
a/src/jalview/appletgui/PCAPanel.java
b/src/jalview/appletgui/PCAPanel.java
index
2d77c59
..
5dc57f9
100644
(file)
--- a/
src/jalview/appletgui/PCAPanel.java
+++ b/
src/jalview/appletgui/PCAPanel.java
@@
-25,7
+25,7
@@
import jalview.analysis.scoremodels.SimilarityParams;
import jalview.api.analysis.ScoreModelI;
import jalview.datamodel.Alignment;
import jalview.datamodel.AlignmentView;
import jalview.api.analysis.ScoreModelI;
import jalview.datamodel.Alignment;
import jalview.datamodel.AlignmentView;
-import jalview.datamodel.ColumnSelection;
+import jalview.datamodel.HiddenColumns;
import jalview.datamodel.SeqCigar;
import jalview.datamodel.SequenceI;
import jalview.util.MessageManager;
import jalview.datamodel.SeqCigar;
import jalview.datamodel.SequenceI;
import jalview.util.MessageManager;
@@
-281,7
+281,7
@@
public class PCAPanel extends EmbmenuFrame implements Runnable,
}
;
Object[] alAndColsel = pcaModel.getSeqtrings()
}
;
Object[] alAndColsel = pcaModel.getSeqtrings()
- .getAlignmentAndColumnSelection(gc);
+ .getAlignmentAndHiddenColumns(gc);
if (alAndColsel != null && alAndColsel[0] != null)
{
if (alAndColsel != null && alAndColsel[0] != null)
{
@@
-289,7
+289,8
@@
public class PCAPanel extends EmbmenuFrame implements Runnable,
AlignFrame af = new AlignFrame(al, av.applet,
"Original Data for PCA", false);
AlignFrame af = new AlignFrame(al, av.applet,
"Original Data for PCA", false);
- af.viewport.setHiddenColumns((ColumnSelection) alAndColsel[1]);
+ af.viewport.getAlignment().setHiddenColumns(
+ (HiddenColumns) alAndColsel[1]);
}
}
}
}