- seq = new Sequence(as.getS1().getName(), as.getAStr1(), as.getS1()
- .getStart(), as.getS1().getEnd());
- sequences.addElement(seq);
-
- seq = new Sequence(as.getS2().getName(), as.getAStr2(), as.getS2()
- .getStart(), as.getS2().getEnd());
- sequences.addElement(seq);