git://source.jalview.org
/
jalview.git
/ blobdiff
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
shortlog
|
log
|
commit
|
commitdiff
|
tree
raw
|
inline
| side by side
JAL-2215 fix - trigger alignment update when ‘ignore gaps’ setting changed
[jalview.git]
/
src
/
jalview
/
appletgui
/
ScalePanel.java
diff --git
a/src/jalview/appletgui/ScalePanel.java
b/src/jalview/appletgui/ScalePanel.java
index
0f71818
..
d2c1693
100755
(executable)
--- a/
src/jalview/appletgui/ScalePanel.java
+++ b/
src/jalview/appletgui/ScalePanel.java
@@
-409,22
+409,33
@@
public class ScalePanel extends Panel implements MouseMotionListener,
// Fill the selected columns
ColumnSelection cs = av.getColumnSelection();
// Fill the selected columns
ColumnSelection cs = av.getColumnSelection();
- gg.setColor(new Color(220, 0, 0));
int avCharWidth = av.getCharWidth();
int avcharHeight = av.getCharHeight();
int avCharWidth = av.getCharWidth();
int avcharHeight = av.getCharHeight();
- for (int sel : cs.getSelected())
+ if (cs != null)
{
{
- // TODO: JAL-2001 - provide a fast method to list visible selected in a
- // given range
- if (av.hasHiddenColumns())
+ gg.setColor(new Color(220, 0, 0));
+ boolean hasHiddenColumns = cs.hasHiddenColumns();
+ for (int sel : cs.getSelected())
{
{
- sel = av.getColumnSelection().findColumnPosition(sel);
- }
+ // TODO: JAL-2001 - provide a fast method to list visible selected in a
+ // given range
+ if (hasHiddenColumns)
+ {
+ if (cs.isVisible(sel))
+ {
+ sel = cs.findColumnPosition(sel);
+ }
+ else
+ {
+ continue;
+ }
+ }
- if ((sel >= startx) && (sel <= endx))
- {
- gg.fillRect((sel - startx) * avCharWidth, 0, avCharWidth,
- getSize().height);
+ if ((sel >= startx) && (sel <= endx))
+ {
+ gg.fillRect((sel - startx) * avCharWidth, 0, avCharWidth,
+ getSize().height);
+ }
}
}
}
}
@@
-471,12
+482,10
@@
public class ScalePanel extends Panel implements MouseMotionListener,
if (av.getShowHiddenMarkers())
{
int widthx = 1 + endx - startx;
if (av.getShowHiddenMarkers())
{
int widthx = 1 + endx - startx;
- for (int i = 0; i < av.getColumnSelection().getHiddenColumns()
- .size(); i++)
+ for (int i = 0; i < cs.getHiddenColumns().size(); i++)
{
{
- res = av.getColumnSelection().findHiddenRegionPosition(i)
- - startx;
+ res = cs.findHiddenRegionPosition(i) - startx;
if (res < 0 || res > widthx)
{
if (res < 0 || res > widthx)
{