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Takes string[] instead of seq[]
[jalview.git]
/
src
/
jalview
/
appletgui
/
SeqCanvas.java
diff --git
a/src/jalview/appletgui/SeqCanvas.java
b/src/jalview/appletgui/SeqCanvas.java
index
3e47139
..
0df4322
100755
(executable)
--- a/
src/jalview/appletgui/SeqCanvas.java
+++ b/
src/jalview/appletgui/SeqCanvas.java
@@
-294,6
+294,8
@@
public class SeqCanvas
int LABEL_WEST, LABEL_EAST;
\r
public int getWrappedCanvasWidth(int cwidth)
\r
{
\r
int LABEL_WEST, LABEL_EAST;
\r
public int getWrappedCanvasWidth(int cwidth)
\r
{
\r
+ cwidth -= cwidth % av.charWidth;
\r
+
\r
FontMetrics fm = getFontMetrics(av.getFont());
\r
\r
LABEL_EAST = 0;
\r
FontMetrics fm = getFontMetrics(av.getFont());
\r
\r
LABEL_EAST = 0;
\r
@@
-334,15
+336,12
@@
public class SeqCanvas
\r
FontMetrics fm = getFontMetrics(av.getFont());
\r
\r
\r
FontMetrics fm = getFontMetrics(av.getFont());
\r
\r
- int LABEL_EAST = 0;
\r
\r
if (av.scaleRightWrapped)
\r
{
\r
LABEL_EAST = fm.stringWidth(getMask());
\r
}
\r
\r
\r
if (av.scaleRightWrapped)
\r
{
\r
LABEL_EAST = fm.stringWidth(getMask());
\r
}
\r
\r
- int LABEL_WEST = 0;
\r
-
\r
if (av.scaleLeftWrapped)
\r
{
\r
LABEL_WEST = fm.stringWidth(getMask());
\r
if (av.scaleLeftWrapped)
\r
{
\r
LABEL_WEST = fm.stringWidth(getMask());
\r
@@
-496,7
+495,7
@@
public class SeqCanvas
groupIndex = 0;
\r
}
\r
\r
groupIndex = 0;
\r
}
\r
\r
- if ( group != null)
\r
+ if ( group != null )
\r
{
\r
do
\r
{
\r
{
\r
do
\r
{
\r
@@
-505,6
+504,7
@@
public class SeqCanvas
boolean inGroup = false;
\r
int top = -1;
\r
int bottom = -1;
\r
boolean inGroup = false;
\r
int top = -1;
\r
int bottom = -1;
\r
+ int alHeight = av.alignment.getHeight()-1;
\r
\r
for (i = startSeq; i < endSeq; i++)
\r
{
\r
\r
for (i = startSeq; i < endSeq; i++)
\r
{
\r
@@
-519,12
+519,13
@@
public class SeqCanvas
}
\r
\r
if ( (sx <= (endRes-startRes)*av.charWidth) &&
\r
}
\r
\r
if ( (sx <= (endRes-startRes)*av.charWidth) &&
\r
- group.sequences.contains(av.alignment.getSequenceAt(
\r
+ group.getSequences(false).contains(av.alignment.getSequenceAt(
\r
i)))
\r
{
\r
i)))
\r
{
\r
- if ((bottom == -1) &&
\r
- !group.sequences.contains(
\r
- av.alignment.getSequenceAt(i + 1)))
\r
+ if ( (bottom == -1) &&
\r
+ (i >= alHeight ||
\r
+ !group.getSequences(false).contains(
\r
+ av.alignment.getSequenceAt(i + 1))))
\r
{
\r
bottom = sy + av.charHeight;
\r
}
\r
{
\r
bottom = sy + av.charHeight;
\r
}
\r
@@
-532,7
+533,7
@@
public class SeqCanvas
if (!inGroup)
\r
{
\r
if (((top == -1) && (i == 0)) ||
\r
if (!inGroup)
\r
{
\r
if (((top == -1) && (i == 0)) ||
\r
- !group.sequences.contains(
\r
+ !group.getSequences(false).contains(
\r
av.alignment.getSequenceAt(i - 1)))
\r
{
\r
top = sy;
\r
av.alignment.getSequenceAt(i - 1)))
\r
{
\r
top = sy;
\r