+ if (copycolsel && (av.getColumnSelection() == null || !av.isColSelChanged(true)))
+ {
+ // the current selection is unset or from a previous message
+ // so import the new colsel.
+ if (colsel == null || colsel.size() == 0)
+ {
+ if (av.getColumnSelection() != null)
+ {
+ av.getColumnSelection().clear();
+ }
+ }
+ else
+ {
+ // TODO: shift colSel according to the intersecting sequences
+ if (av.getColumnSelection() == null)
+ {
+ av.setColumnSelection(new ColumnSelection(colsel));
+ }
+ else
+ {
+ av.getColumnSelection().setElementsFrom(colsel);
+ }
+ }
+ repaint |= av.isColSelChanged(true);
+ }
+ if (copycolsel && av.hasHiddenColumns()
+ && (av.getColumnSelection() == null || av.getColumnSelection().getHiddenColumns() == null))
+ {
+ System.err.println("Bad things");
+ }
+ if (repaint)
+ {
+ ap.scalePanelHolder.repaint();
+ ap.repaint();
+ }
+ }
+
+ /**
+ * scroll to the given row/column - or nearest visible location
+ * @param row
+ * @param column
+ */
+ public void scrollTo(int row, int column)
+ {
+
+ row = row<0 ? ap.av.startSeq : row;
+ column = column<0 ? ap.av.startRes : column;
+ ap.scrollTo(row, row, column, true, true);
+ }
+ /**
+ * scroll to the given row - or nearest visible location
+ * @param row
+ */
+ public void scrollToRow(int row)
+ {
+
+ row = row<0 ? ap.av.startSeq : row;
+ ap.scrollTo(row, row, ap.av.startRes, true, true);
+ }
+ /**
+ * scroll to the given column - or nearest visible location
+ * @param column
+ */
+ public void scrollToColumn(int column)
+ {
+
+ column = column<0 ? ap.av.startRes : column;
+ ap.scrollTo(ap.av.startRes, ap.av.startRes, column, true, true);