+ }\r
+\r
+ if ( (res < av.getAlignment().getWidth()) && (res < lastres))\r
+ {\r
+ // dragLeft, delete gap\r
+ editSequence(false, res);\r
+ }\r
+ else\r
+ {\r
+ editSequence(true, res);\r
+ }\r
+\r
+ mouseDragging = true;\r
+ if (scrollThread != null)\r
+ {\r
+ scrollThread.setEvent(evt);\r
+ }\r
+\r
+ }\r
+\r
+ synchronized void editSequence(boolean insertGap, int startres)\r
+ {\r
+ int fixedLeft = -1;\r
+ int fixedRight = -1;\r
+ boolean fixedColumns = false;\r
+ SequenceGroup sg = av.getSelectionGroup();\r
+\r
+ SequenceI seq = av.alignment.getSequenceAt(startseq);\r
+\r
+ if (!groupEditing && av.hasHiddenRows)\r
+ {\r
+ if (av.hiddenRepSequences != null\r
+ && av.hiddenRepSequences.containsKey(seq))\r
+ {\r
+ sg = (SequenceGroup) av.hiddenRepSequences.get(seq);\r
+ groupEditing = true;\r
+ }\r
+ }\r
+\r
+ StringBuffer message = new StringBuffer();\r
+ if (groupEditing)\r
+ {\r
+ message.append("Edit group:");\r
+ if (editCommand == null)\r
+ {\r
+ editCommand = new EditCommand("Edit Group");\r
+ }\r
+ }\r
+ else\r
+ {\r
+ message.append("Edit sequence: " + seq.getName());\r
+ String label = seq.getName();\r
+ if (label.length() > 10)\r
+ {\r
+ label = label.substring(0, 10);\r
+ }\r
+ if (editCommand == null)\r
+ {\r
+ editCommand = new EditCommand("Edit " + label);\r
+ }\r
+ }\r
+\r
+ if (insertGap)\r
+ {\r
+ message.append(" insert ");\r
+ }\r
+ else\r
+ {\r
+ message.append(" delete ");\r
+ }\r
+\r
+ message.append(Math.abs(startres - lastres) + " gaps.");\r
+ ap.alignFrame.statusBar.setText(message.toString());\r
+\r
+ //Are we editing within a selection group?\r
+ if (groupEditing\r
+ || (sg != null && sg.getSequences(av.hiddenRepSequences).contains(seq)))\r
+ {\r
+ fixedColumns = true;\r
+\r
+ //sg might be null as the user may only see 1 sequence,\r
+ //but the sequence represents a group\r
+ if (sg == null)\r
+ {\r
+ if (av.hiddenRepSequences == null\r
+ || !av.hiddenRepSequences.containsKey(seq))\r
+ {\r
+ endEditing();\r
+ return;\r
+ }\r
+\r
+ sg = (SequenceGroup) av.hiddenRepSequences.get(seq);\r
+ }\r