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JAL-1645 source formatting and organise imports
[jalview.git]
/
src
/
jalview
/
appletgui
/
SequenceRenderer.java
diff --git
a/src/jalview/appletgui/SequenceRenderer.java
b/src/jalview/appletgui/SequenceRenderer.java
index
e07fcb2
..
09b50c4
100755
(executable)
--- a/
src/jalview/appletgui/SequenceRenderer.java
+++ b/
src/jalview/appletgui/SequenceRenderer.java
@@
-256,8
+256,7
@@
public class SequenceRenderer implements jalview.api.SequenceRenderer
}
if (currentSequenceGroup.getShowNonconserved())
{
}
if (currentSequenceGroup.getShowNonconserved())
{
- s = getDisplayChar(srep, i, s,
- '.');
+ s = getDisplayChar(srep, i, s, '.');
}
}
else
}
}
else
@@
-281,8
+280,7
@@
public class SequenceRenderer implements jalview.api.SequenceRenderer
}
if (av.getShowUnconserved())
{
}
if (av.getShowUnconserved())
{
- s = getDisplayChar(srep, i, s,
- '.');
+ s = getDisplayChar(srep, i, s, '.');
}
}
}
}
@@
-314,13
+312,15
@@
public class SequenceRenderer implements jalview.api.SequenceRenderer
}
}
- private char getDisplayChar(final boolean usesrep, int position,
- char s, char c)
+ private char getDisplayChar(final boolean usesrep, int position, char s,
+ char c)
{
// TODO - use currentSequenceGroup rather than alignment
// currentSequenceGroup.getConsensus()
{
// TODO - use currentSequenceGroup rather than alignment
// currentSequenceGroup.getConsensus()
- char conschar = (usesrep) ? av.getAlignment().getSeqrep().getCharAt(position) : av.getAlignmentConsensusAnnotation().annotations[position].displayCharacter
- .charAt(0);
+ char conschar = (usesrep) ? av.getAlignment().getSeqrep()
+ .getCharAt(position)
+ : av.getAlignmentConsensusAnnotation().annotations[position].displayCharacter
+ .charAt(0);
if (!jalview.util.Comparison.isGap(conschar) && s == conschar)
{
s = c;
if (!jalview.util.Comparison.isGap(conschar) && s == conschar)
{
s = c;