- if (av.getGlobalColourScheme() instanceof ConservationColourScheme)\r
- {\r
- ConservationColourScheme ccs = (ConservationColourScheme) av.\r
- getGlobalColourScheme();\r
+ ColourSchemeI cs = ColourSchemeProperty.getColour(sequences, av.alignment.getWidth(),\r
+ ColourSchemeProperty.getColourName(av.getGlobalColourScheme()));\r
+\r
+\r
+ SequenceGroup sg = new SequenceGroup(sequences, "TreeGroup",\r
+ cs, true, true,\r
+ false, 0, av.alignment.getWidth()-1);\r
+\r
+\r
+ if ( av.getGlobalColourScheme()!=null\r
+ && av.getGlobalColourScheme().conservationApplied())\r
+ {\r