boolean fitToWindow = true;\r
boolean showDistances = false;\r
boolean showBootstrap = false;\r
boolean markPlaceholders = false;\r
\r
int offx = 20;\r
boolean fitToWindow = true;\r
boolean showDistances = false;\r
boolean showBootstrap = false;\r
boolean markPlaceholders = false;\r
\r
int offx = 20;\r
charWidth, charHeight);\r
\r
nameHash.put( (SequenceI) node.element(), rect);\r
charWidth, charHeight);\r
\r
nameHash.put( (SequenceI) node.element(), rect);\r
// Colour selected leaves differently\r
SequenceGroup selected = av.getSelectionGroup();\r
if (selected != null &&\r
// Colour selected leaves differently\r
SequenceGroup selected = av.getSelectionGroup();\r
if (selected != null &&\r
\r
pickNode(pickBox, top, chunk, wscale, width, offx, offy);\r
}\r
\r
pickNode(pickBox, top, chunk, wscale, width, offx, offy);\r
}\r
\r
g.setColor(Color.white);\r
g.fillRect(0, 0, width, height);\r
\r
g.setColor(Color.white);\r
g.fillRect(0, 0, width, height);\r
\r
drawNode(g, tree.getTopNode(), chunk, wscale, width, offx, offy);\r
\r
\r
drawNode(g, tree.getTopNode(), chunk, wscale, width, offx, offy);\r
\r
{\r
Conservation c = new Conservation("Group",\r
ResidueProperties.propHash, 3,\r
{\r
Conservation c = new Conservation("Group",\r
ResidueProperties.propHash, 3,\r