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Must be 1.1 compliant
[jalview.git]
/
src
/
jalview
/
appletgui
/
TreeCanvas.java
diff --git
a/src/jalview/appletgui/TreeCanvas.java
b/src/jalview/appletgui/TreeCanvas.java
index
e3f6c3c
..
af1d752
100755
(executable)
--- a/
src/jalview/appletgui/TreeCanvas.java
+++ b/
src/jalview/appletgui/TreeCanvas.java
@@
-188,7
+188,7
@@
public class TreeCanvas
// Colour selected leaves differently
\r
SequenceGroup selected = av.getSelectionGroup();
\r
if (selected != null &&
\r
// Colour selected leaves differently
\r
SequenceGroup selected = av.getSelectionGroup();
\r
if (selected != null &&
\r
- selected.sequences.contains( (SequenceI) node.element()))
\r
+ selected.getSequences(false).contains( (SequenceI) node.element()))
\r
{
\r
g.setColor(Color.gray);
\r
\r
{
\r
g.setColor(Color.gray);
\r
\r
@@
-523,7
+523,8
@@
public class TreeCanvas
{
\r
Conservation c = new Conservation("Group",
\r
ResidueProperties.propHash, 3,
\r
{
\r
Conservation c = new Conservation("Group",
\r
ResidueProperties.propHash, 3,
\r
- sg.sequences, sg.getStartRes(),
\r
+ sg.getSequences(false),
\r
+ sg.getStartRes(),
\r
sg.getEndRes());
\r
\r
c.calculate();
\r
sg.getEndRes());
\r
\r
c.calculate();
\r