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JAL-2629 add sort by evalue and bit score
[jalview.git]
/
src
/
jalview
/
appletgui
/
TreeCanvas.java
diff --git
a/src/jalview/appletgui/TreeCanvas.java
b/src/jalview/appletgui/TreeCanvas.java
index
6ee75bd
..
cb26fb5
100755
(executable)
--- a/
src/jalview/appletgui/TreeCanvas.java
+++ b/
src/jalview/appletgui/TreeCanvas.java
@@
-631,7
+631,7
@@
public class TreeCanvas extends Panel
Vector<SequenceNode> l = tree.findLeaves(groups.get(i));
Vector<SequenceNode> l = tree.findLeaves(groups.get(i));
- Vector<SequenceI> sequences = new Vector<SequenceI>();
+ Vector<SequenceI> sequences = new Vector<>();
for (int j = 0; j < l.size(); j++)
{
SequenceI s1 = (SequenceI) l.elementAt(j).element();
for (int j = 0; j < l.size(); j++)
{
SequenceI s1 = (SequenceI) l.elementAt(j).element();
@@
-657,7
+657,8
@@
public class TreeCanvas extends Panel
}
else
{
}
else
{
- cs = ColourSchemeProperty.getColourScheme(sg, ColourSchemeProperty
+ cs = ColourSchemeProperty.getColourScheme(av, sg,
+ ColourSchemeProperty
.getColourName(av.getGlobalColourScheme()));
}
// cs is null if shading is an annotationColourGradient
.getColourName(av.getGlobalColourScheme()));
}
// cs is null if shading is an annotationColourGradient