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JAL-2437 Synchronization corrections and unit tests
[jalview.git]
/
src
/
jalview
/
appletgui
/
TreeCanvas.java
diff --git
a/src/jalview/appletgui/TreeCanvas.java
b/src/jalview/appletgui/TreeCanvas.java
index
510df94
..
e30879c
100755
(executable)
--- a/
src/jalview/appletgui/TreeCanvas.java
+++ b/
src/jalview/appletgui/TreeCanvas.java
@@
-672,13
+672,13
@@
public class TreeCanvas extends Panel implements MouseListener,
// instead we set it manually - recalc called after updateAnnotation
sg.setColourScheme(cs);
sg.getGroupColourScheme().setThreshold(
// instead we set it manually - recalc called after updateAnnotation
sg.setColourScheme(cs);
sg.getGroupColourScheme().setThreshold(
- av.getViewportColourScheme().getThreshold(),
+ av.getResidueShading().getThreshold(),
av.isIgnoreGapsConsensus());
sg.setName("JTreeGroup:" + sg.hashCode());
sg.setIdColour(col);
if (av.getGlobalColourScheme() != null
av.isIgnoreGapsConsensus());
sg.setName("JTreeGroup:" + sg.hashCode());
sg.setIdColour(col);
if (av.getGlobalColourScheme() != null
- && av.getViewportColourScheme().conservationApplied())
+ && av.getResidueShading().conservationApplied())
{
Conservation c = new Conservation("Group", sg.getSequences(null),
sg.getStartRes(), sg.getEndRes());
{
Conservation c = new Conservation("Group", sg.getSequences(null),
sg.getStartRes(), sg.getEndRes());