import jalview.api.analysis.ViewBasedAnalysisI;
import jalview.datamodel.Alignment;
import jalview.datamodel.AlignmentView;
import jalview.api.analysis.ViewBasedAnalysisI;
import jalview.datamodel.Alignment;
import jalview.datamodel.AlignmentView;
import jalview.datamodel.SequenceI;
import jalview.io.NewickFile;
import jalview.schemes.ResidueProperties;
import jalview.datamodel.SequenceI;
import jalview.io.NewickFile;
import jalview.schemes.ResidueProperties;
AlignFrame af = new AlignFrame(al, av.applet,
"Original Data for Tree", false);
AlignFrame af = new AlignFrame(al, av.applet,
"Original Data for Tree", false);