import jalview.analysis.scoremodels.SimilarityParams;
import jalview.api.analysis.ScoreModelI;
import jalview.datamodel.Alignment;
import jalview.analysis.scoremodels.SimilarityParams;
import jalview.api.analysis.ScoreModelI;
import jalview.datamodel.Alignment;
import jalview.datamodel.SequenceI;
import jalview.io.NewickFile;
import jalview.util.MessageManager;
import jalview.datamodel.SequenceI;
import jalview.io.NewickFile;
import jalview.util.MessageManager;
AlignFrame af = new AlignFrame(al, av.applet,
"Original Data for Tree", false);
AlignFrame af = new AlignFrame(al, av.applet,
"Original Data for Tree", false);