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JAL-1731 fix JPred4 citation in legacy client code
[jalview.git]
/
src
/
jalview
/
appletgui
/
UserDefinedColours.java
diff --git
a/src/jalview/appletgui/UserDefinedColours.java
b/src/jalview/appletgui/UserDefinedColours.java
index
9ffe169
..
342c065
100644
(file)
--- a/
src/jalview/appletgui/UserDefinedColours.java
+++ b/
src/jalview/appletgui/UserDefinedColours.java
@@
-1,6
+1,6
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
*
* This file is part of Jalview.
*
*
* This file is part of Jalview.
*
@@
-427,7
+427,9
@@
public class UserDefinedColours extends Panel implements ActionListener,
{
applyButton_actionPerformed();
if (dialog != null)
{
applyButton_actionPerformed();
if (dialog != null)
+ {
dialog.setVisible(false);
dialog.setVisible(false);
+ }
frame.setVisible(false);
}
frame.setVisible(false);
}
@@
-489,7
+491,7
@@
public class UserDefinedColours extends Panel implements ActionListener,
UserColourScheme ucs = new UserColourScheme(newColours);
if (ap != null)
{
UserColourScheme ucs = new UserColourScheme(newColours);
if (ap != null)
{
- ucs.setThreshold(0, ap.av.getIgnoreGapsConsensus());
+ ucs.setThreshold(0, ap.av.isIgnoreGapsConsensus());
}
if (ap != null)
}
if (ap != null)
@@
-557,7
+559,9
@@
public class UserDefinedColours extends Panel implements ActionListener,
}
}
if (dialog != null)
}
}
if (dialog != null)
+ {
dialog.setVisible(false);
dialog.setVisible(false);
+ }
frame.setVisible(false);
return;
frame.setVisible(false);
return;