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JAL-2434 use a constant for StructureMapping.NO_CHAIN (space)
[jalview.git]
/
src
/
jalview
/
appletgui
/
UserDefinedColours.java
diff --git
a/src/jalview/appletgui/UserDefinedColours.java
b/src/jalview/appletgui/UserDefinedColours.java
index
aecc0c9
..
95e36b5
100644
(file)
--- a/
src/jalview/appletgui/UserDefinedColours.java
+++ b/
src/jalview/appletgui/UserDefinedColours.java
@@
-22,7
+22,7
@@
package jalview.appletgui;
import jalview.api.FeatureColourI;
import jalview.datamodel.SequenceGroup;
import jalview.api.FeatureColourI;
import jalview.datamodel.SequenceGroup;
-import jalview.schemes.CollectionColourScheme;
+import jalview.renderer.ResidueShader;
import jalview.schemes.ColourSchemeI;
import jalview.schemes.FeatureColour;
import jalview.schemes.ResidueProperties;
import jalview.schemes.ColourSchemeI;
import jalview.schemes.FeatureColour;
import jalview.schemes.ResidueProperties;
@@
-506,14
+506,14
@@
public class UserDefinedColours extends Panel implements ActionListener,
{
if (seqGroup != null)
{
{
if (seqGroup != null)
{
- seqGroup.cs = new CollectionColourScheme(ucs);
+ seqGroup.cs = new ResidueShader(ucs);
seqGroup.getGroupColourScheme().setThreshold(0,
ap.av.isIgnoreGapsConsensus());
}
else
{
ap.av.setGlobalColourScheme(ucs);
seqGroup.getGroupColourScheme().setThreshold(0,
ap.av.isIgnoreGapsConsensus());
}
else
{
ap.av.setGlobalColourScheme(ucs);
- ap.av.getViewportColourScheme().setThreshold(0,
+ ap.av.getResidueShading().setThreshold(0,
ap.av.isIgnoreGapsConsensus());
}
ap.seqPanel.seqCanvas.img = null;
ap.av.isIgnoreGapsConsensus());
}
ap.seqPanel.seqCanvas.img = null;
@@
-592,7
+592,7
@@
public class UserDefinedColours extends Panel implements ActionListener,
{
if (seqGroup != null)
{
{
if (seqGroup != null)
{
- seqGroup.cs = new CollectionColourScheme(ucs);
+ seqGroup.cs = new ResidueShader(ucs);
}
else
{
}
else
{