- FileOutputStream out = new FileOutputStream(propertiesFile);
- applicationProperties.store(out, "---JalviewX Properties File---");
- out.close();
- }
- catch (Exception ex)
- { System.out.println("Error saving properties: "+ex); }
- }
- /**
- * internal vamsas class discovery state
- */
- private static int vamsasJarsArePresent=-1;
- /**
- * Searches for vamsas client classes on class path.
- * @return true if vamsas client is present on classpath
- */
- public static boolean vamsasJarsPresent() {
- if (vamsasJarsArePresent==-1) {
- try {
- if (jalview.jbgui.GDesktop.class.getClassLoader().loadClass("org.vamsas.client.VorbaId")!=null) {
- jalview.bin.Cache.log.debug("Found Vamsas Classes (org.vamsas.client.VorbaId can be loaded)");
- vamsasJarsArePresent=1;
- Logger lvclient = Logger.getLogger("org.vamsas");
- lvclient.setLevel(Level.toLevel(Cache.getDefault("logs.Vamsas.Level",
- Level.INFO.toString())));
-
- lvclient.addAppender(log.getAppender("JalviewLogger"));
- // Tell the user that debug is enabled
- lvclient.debug("Jalview Vamsas Client Debugging Output Follows.");
- }
- } catch (Exception e) {
- vamsasJarsArePresent=0;
- jalview.bin.Cache.log.debug("Vamsas Classes are not present");
+ jalview.bin.Cache.log.debug(
+ "Found Vamsas Classes (uk.ac..vamsas.client.VorbaId can be loaded)");
+ vamsasJarsArePresent = 1;
+ Logger lvclient = Logger.getLogger("uk.ac.vamsas");
+ lvclient.setLevel(Level.toLevel(Cache.getDefault("logs.Vamsas.Level",
+ Level.INFO.toString())));
+
+ lvclient.addAppender(log.getAppender("JalviewLogger"));
+ // Tell the user that debug is enabled
+ lvclient.debug("Jalview Vamsas Client Debugging Output Follows.");