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JAL-2490 lookup features at each column position
[jalview.git]
/
src
/
jalview
/
bin
/
Jalview.java
diff --git
a/src/jalview/bin/Jalview.java
b/src/jalview/bin/Jalview.java
index
966e952
..
954bb34
100755
(executable)
--- a/
src/jalview/bin/Jalview.java
+++ b/
src/jalview/bin/Jalview.java
@@
-578,18
+578,14
@@
public class Jalview
data = aparser.getValue("tree", true);
if (data != null)
{
data = aparser.getValue("tree", true);
if (data != null)
{
- jalview.io.NewickFile fin = null;
try
{
System.out.println("CMD [-tree " + data
+ "] executed successfully!");
try
{
System.out.println("CMD [-tree " + data
+ "] executed successfully!");
- fin = new NewickFile(data,
+ NewickFile nf = new NewickFile(data,
AppletFormatAdapter.checkProtocol(data));
AppletFormatAdapter.checkProtocol(data));
- if (fin != null)
- {
- af.getViewport().setCurrentTree(
- af.ShowNewickTree(fin, data).getTree());
- }
+ af.getViewport().setCurrentTree(
+ af.showNewickTree(nf, data).getTree());
} catch (IOException ex)
{
System.err.println("Couldn't add tree " + data);
} catch (IOException ex)
{
System.err.println("Couldn't add tree " + data);