-/* viewer.getFrameCount
- }
- String alreadyMapped = StructureSelectionManager
- .getStructureSelectionManager().alreadyMappedToFile(
- pdbentry.getId());
-MCview.PDBfile reader = null;
-if (alreadyMapped != null)
-{
-reader = StructureSelectionManager.getStructureSelectionManager()
- .setMapping(seq, chains, pdbentry.getFile(), protocol);
-
- } */
+ if (sequenceIds!=null && sequenceIds.length()>0)
+ {
+ return alFrame.addJmolInstance(viewer, separatorListToArray(sequenceIds));
+ } else {
+ return alFrame.addJmolInstance(viewer, null);
+ }