- if( sScoreFile != null && !"".equals(sScoreFile) ) {\r
- try {\r
- if (debug) {\r
- System.err.println("Attempting to load T-COFFEE score file from the scoreFile parameter");\r
- }\r
- if (!newAlignFrame.loadScoreFile(sScoreFile)) {\r
- System.err.println("Failed to parse T-COFFEE parameter as a valid score file ('"+sScoreFile+"')");\r
- }\r
- }catch( Exception e ) {\r
- System.err.printf("Cannot read score file: '%s'. Cause: %s \n", sScoreFile, e.getMessage());\r
+ if (sScoreFile != null && !"".equals(sScoreFile))\r
+ {\r
+ try\r
+ {\r
+ if (debug)\r
+ {\r
+ System.err\r
+ .println("Attempting to load T-COFFEE score file from the scoreFile parameter");\r
+ }\r
+ if (!newAlignFrame.loadScoreFile(sScoreFile))\r
+ {\r
+ System.err\r
+ .println("Failed to parse T-COFFEE parameter as a valid score file ('"\r
+ + sScoreFile + "')");\r