- /**\r
- * Starts a new LoadingThread for loading an alignment file\r
- *\r
- * @param file file name including full path to file\r
- * @param protocol file or URL or paste\r
- * @param format Fasta, Clustal, PFAM, MSF, PIR, BLC, Jalview\r
- */\r
- public void LoadFile(String file, String protocol, String format)\r
- {\r
- LoadingThread loader = new LoadingThread(file, protocol, format, this);\r
- loader.start();\r
+ if ( (sequences != null) && (sequences.length > 0))\r
+ {\r
+ AlignFrame af = new AlignFrame(new Alignment(sequences), null, args[0]);\r
+ af.statusBar.setText("Successfully loaded file " + args[0]);\r
+ }\r