- URL urlScore = new URL(sScoreFile);\r
- newAlignFrame.loadScoreFile(urlScore);\r
- \r
- }\r
- catch( Exception e ) {\r
- // TODO error message log (shows a warning dialogbox?)\r
+ if (debug) {\r
+ System.err.println("Attempting to load T-COFFEE score file from the scoreFile parameter");\r
+ }\r
+ if (!newAlignFrame.loadScoreFile(sScoreFile)) {\r
+ System.err.println("Failed to parse T-COFFEE parameter as a valid score file ('"+sScoreFile+"')");\r
+ }\r
+ }catch( Exception e ) {\r