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total annotation score is a double for maximum precision.
[jalview.git]
/
src
/
jalview
/
bin
/
JalviewLite.java
diff --git
a/src/jalview/bin/JalviewLite.java
b/src/jalview/bin/JalviewLite.java
index
df82b5f
..
ffdbb1b
100755
(executable)
--- a/
src/jalview/bin/JalviewLite.java
+++ b/
src/jalview/bin/JalviewLite.java
@@
-159,13
+159,15
@@
public class JalviewLite
{
try
{
{
try
{
- Class.forName("org.jmol.adapter.smarter.SmarterJmolAdapter");
-
- jmolAvailable = true;
+ if (!System.getProperty("java.version").startsWith("1.1"))
+ {
+ Class.forName("org.jmol.adapter.smarter.SmarterJmolAdapter");
+ jmolAvailable = true;
+ }
}
catch (java.lang.ClassNotFoundException ex)
{
}
catch (java.lang.ClassNotFoundException ex)
{
- System.out.println("Jmol not found - Using MCview for structures");
+ System.out.println("Jmol not available - Using MCview for structures");
}
int r = 255;
}
int r = 255;
@@
-549,6
+551,10
@@
public class JalviewLite
pdb.setFile(param);
pdb.setFile(param);
+ for(int i=0; i<seqs.length; i++)
+ {
+ ((Sequence)seqs[i]).addPDBId(pdb);
+ }
if (jmolAvailable)
new jalview.appletgui.AppletJmol(pdb,
if (jmolAvailable)
new jalview.appletgui.AppletJmol(pdb,