- COLOUR("Applies the colour scheme to the open alignment window. Valid values are:\n"
- + "clustal,\n" + "blosum62,\n" + "pc-identity,\n" + "zappo,\n"
- + "taylor,\n" + "gecos-flower,\n" + "gecos-blossom,\n"
- + "gecos-sunset,\n" + "gecos-ocean,\n" + "hydrophobic,\n"
- + "helix-propensity,\n" + "strand-propensity,\n"
- + "turn-propensity,\n" + "buried-index,\n" + "nucleotide,\n"
- + "nucleotide-ambiguity,\n" + "purine-pyrimidine,\n"
- + "rna-helices,\n" + "t-coffee-scores,\n" + "sequence-id.",
- Opt.STRING, Opt.LINKED),
- FEATURES("Add a feature file filename or URL URL to the open alignment.",
- Opt.STRING, Opt.LINKED, Opt.MULTI, Opt.ALLOWSUBSTITUTIONS),
- TREE("Add a tree file filename or URL URL to the open alignment.",
- Opt.STRING, Opt.LINKED, Opt.MULTI, Opt.ALLOWSUBSTITUTIONS),
+ COLOUR("color", // being a bit soft on the Americans!
+ "Applies the colour scheme to the open alignment window. Valid values are:\n"
+ + "clustal,\n" + "blosum62,\n" + "pc-identity,\n"
+ + "zappo,\n" + "taylor,\n" + "gecos-flower,\n"
+ + "gecos-blossom,\n" + "gecos-sunset,\n"
+ + "gecos-ocean,\n" + "hydrophobic,\n"
+ + "helix-propensity,\n" + "strand-propensity,\n"
+ + "turn-propensity,\n" + "buried-index,\n"
+ + "nucleotide,\n" + "nucleotide-ambiguity,\n"
+ + "purine-pyrimidine,\n" + "rna-helices,\n"
+ + "t-coffee-scores,\n" + "sequence-id.",
+ Opt.STRING, Opt.LINKED, Opt.ALLOWALL),
+ FEATURES("Add a feature file or URL to the open alignment.", Opt.STRING,
+ Opt.LINKED, Opt.MULTI, Opt.ALLOWSUBSTITUTIONS),
+ TREE("Add a tree file or URL to the open alignment.", Opt.STRING,
+ Opt.LINKED, Opt.MULTI, Opt.ALLOWSUBSTITUTIONS),