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[jalview.git]
/
src
/
jalview
/
binding
/
AnnotationElement.java
diff --git
a/src/jalview/binding/AnnotationElement.java
b/src/jalview/binding/AnnotationElement.java
index
16c3dab
..
e4aec31
100755
(executable)
--- a/
src/jalview/binding/AnnotationElement.java
+++ b/
src/jalview/binding/AnnotationElement.java
@@
-1,36
+1,36
@@
/*
\r
/*
\r
- * This class was automatically generated with
\r
+ * This class was automatically generated with
\r
* <a href="http://www.castor.org">Castor 0.9.6</a>, using an XML
\r
* Schema.
\r
* $Id$
\r
*/
\r
* <a href="http://www.castor.org">Castor 0.9.6</a>, using an XML
\r
* Schema.
\r
* $Id$
\r
*/
\r
-package jalview.binding;
\r
-
\r
-import org.exolab.castor.xml.MarshalException;
\r
-import org.exolab.castor.xml.Marshaller;
\r
-import org.exolab.castor.xml.Unmarshaller;
\r
-import org.exolab.castor.xml.ValidationException;
\r
\r
\r
-import org.xml.sax.ContentHandler;
\r
+package jalview.binding;
\r
\r
\r
+ //---------------------------------/
\r
+ //- Imported classes and packages -/
\r
//---------------------------------/
\r
//---------------------------------/
\r
-//- Imported classes and packages -/
\r
-//---------------------------------/
\r
+
\r
import java.io.IOException;
\r
import java.io.Reader;
\r
import java.io.Serializable;
\r
import java.io.Writer;
\r
import java.io.IOException;
\r
import java.io.Reader;
\r
import java.io.Serializable;
\r
import java.io.Writer;
\r
-
\r
+import org.exolab.castor.xml.MarshalException;
\r
+import org.exolab.castor.xml.Marshaller;
\r
+import org.exolab.castor.xml.Unmarshaller;
\r
+import org.exolab.castor.xml.ValidationException;
\r
+import org.xml.sax.ContentHandler;
\r
\r
/**
\r
* Class AnnotationElement.
\r
\r
/**
\r
* Class AnnotationElement.
\r
- *
\r
+ *
\r
* @version $Revision$ $Date$
\r
*/
\r
* @version $Revision$ $Date$
\r
*/
\r
-public class AnnotationElement implements java.io.Serializable
\r
-{
\r
- //--------------------------/
\r
- //- Class/Member Variables -/
\r
+public class AnnotationElement implements java.io.Serializable {
\r
+
\r
+
\r
+ //--------------------------/
\r
+ //- Class/Member Variables -/
\r
//--------------------------/
\r
\r
/**
\r
//--------------------------/
\r
\r
/**
\r
@@
-68,276
+68,239
@@
public class AnnotationElement implements java.io.Serializable
*/
\r
private boolean _has_value;
\r
\r
*/
\r
private boolean _has_value;
\r
\r
+
\r
+ //----------------/
\r
+ //- Constructors -/
\r
//----------------/
\r
//----------------/
\r
- //- Constructors -/
\r
- //----------------/
\r
- public AnnotationElement()
\r
- {
\r
+
\r
+ public AnnotationElement() {
\r
super();
\r
super();
\r
- }
\r
+ } //-- jalview.binding.AnnotationElement()
\r
+
\r
\r
\r
- //-- jalview.binding.AnnotationElement()
\r
+ //-----------/
\r
+ //- Methods -/
\r
//-----------/
\r
\r
/**
\r
//-----------/
\r
\r
/**
\r
- * DOCUMENT ME!
\r
+ * Method deletePosition
\r
+ *
\r
*/
\r
public void deletePosition()
\r
{
\r
*/
\r
public void deletePosition()
\r
{
\r
- this._has_position = false;
\r
- }
\r
-
\r
- //-- void deletePosition()
\r
+ this._has_position= false;
\r
+ } //-- void deletePosition()
\r
\r
/**
\r
* Method deleteValue
\r
\r
/**
\r
* Method deleteValue
\r
- *
\r
+ *
\r
*/
\r
public void deleteValue()
\r
{
\r
*/
\r
public void deleteValue()
\r
{
\r
- this._has_value = false;
\r
- }
\r
-
\r
- //-- void deleteValue()
\r
+ this._has_value= false;
\r
+ } //-- void deleteValue()
\r
\r
/**
\r
* Returns the value of field 'description'.
\r
\r
/**
\r
* Returns the value of field 'description'.
\r
- *
\r
+ *
\r
* @return String
\r
* @return the value of field 'description'.
\r
*/
\r
public java.lang.String getDescription()
\r
{
\r
return this._description;
\r
* @return String
\r
* @return the value of field 'description'.
\r
*/
\r
public java.lang.String getDescription()
\r
{
\r
return this._description;
\r
- }
\r
-
\r
- //-- java.lang.String getDescription()
\r
+ } //-- java.lang.String getDescription()
\r
\r
/**
\r
* Returns the value of field 'displayCharacter'.
\r
\r
/**
\r
* Returns the value of field 'displayCharacter'.
\r
- *
\r
+ *
\r
* @return String
\r
* @return the value of field 'displayCharacter'.
\r
*/
\r
public java.lang.String getDisplayCharacter()
\r
{
\r
return this._displayCharacter;
\r
* @return String
\r
* @return the value of field 'displayCharacter'.
\r
*/
\r
public java.lang.String getDisplayCharacter()
\r
{
\r
return this._displayCharacter;
\r
- }
\r
-
\r
- //-- java.lang.String getDisplayCharacter()
\r
+ } //-- java.lang.String getDisplayCharacter()
\r
\r
/**
\r
* Returns the value of field 'position'.
\r
\r
/**
\r
* Returns the value of field 'position'.
\r
- *
\r
+ *
\r
* @return int
\r
* @return the value of field 'position'.
\r
*/
\r
public int getPosition()
\r
{
\r
return this._position;
\r
* @return int
\r
* @return the value of field 'position'.
\r
*/
\r
public int getPosition()
\r
{
\r
return this._position;
\r
- }
\r
-
\r
- //-- int getPosition()
\r
+ } //-- int getPosition()
\r
\r
/**
\r
* Returns the value of field 'secondaryStructure'.
\r
\r
/**
\r
* Returns the value of field 'secondaryStructure'.
\r
- *
\r
+ *
\r
* @return String
\r
* @return the value of field 'secondaryStructure'.
\r
*/
\r
public java.lang.String getSecondaryStructure()
\r
{
\r
return this._secondaryStructure;
\r
* @return String
\r
* @return the value of field 'secondaryStructure'.
\r
*/
\r
public java.lang.String getSecondaryStructure()
\r
{
\r
return this._secondaryStructure;
\r
- }
\r
-
\r
- //-- java.lang.String getSecondaryStructure()
\r
+ } //-- java.lang.String getSecondaryStructure()
\r
\r
/**
\r
* Returns the value of field 'value'.
\r
\r
/**
\r
* Returns the value of field 'value'.
\r
- *
\r
+ *
\r
* @return float
\r
* @return the value of field 'value'.
\r
*/
\r
public float getValue()
\r
{
\r
return this._value;
\r
* @return float
\r
* @return the value of field 'value'.
\r
*/
\r
public float getValue()
\r
{
\r
return this._value;
\r
- }
\r
-
\r
- //-- float getValue()
\r
+ } //-- float getValue()
\r
\r
/**
\r
* Method hasPosition
\r
\r
/**
\r
* Method hasPosition
\r
- *
\r
- *
\r
- *
\r
+ *
\r
+ *
\r
+ *
\r
* @return boolean
\r
*/
\r
public boolean hasPosition()
\r
{
\r
return this._has_position;
\r
* @return boolean
\r
*/
\r
public boolean hasPosition()
\r
{
\r
return this._has_position;
\r
- }
\r
-
\r
- //-- boolean hasPosition()
\r
+ } //-- boolean hasPosition()
\r
\r
/**
\r
* Method hasValue
\r
\r
/**
\r
* Method hasValue
\r
- *
\r
- *
\r
- *
\r
+ *
\r
+ *
\r
+ *
\r
* @return boolean
\r
*/
\r
public boolean hasValue()
\r
{
\r
return this._has_value;
\r
* @return boolean
\r
*/
\r
public boolean hasValue()
\r
{
\r
return this._has_value;
\r
- }
\r
-
\r
- //-- boolean hasValue()
\r
+ } //-- boolean hasValue()
\r
\r
/**
\r
* Method isValid
\r
\r
/**
\r
* Method isValid
\r
- *
\r
- *
\r
- *
\r
+ *
\r
+ *
\r
+ *
\r
* @return boolean
\r
*/
\r
public boolean isValid()
\r
{
\r
* @return boolean
\r
*/
\r
public boolean isValid()
\r
{
\r
- try
\r
- {
\r
+ try {
\r
validate();
\r
}
\r
validate();
\r
}
\r
- catch (org.exolab.castor.xml.ValidationException vex)
\r
- {
\r
+ catch (org.exolab.castor.xml.ValidationException vex) {
\r
return false;
\r
}
\r
return false;
\r
}
\r
-
\r
return true;
\r
return true;
\r
- }
\r
-
\r
- //-- boolean isValid()
\r
+ } //-- boolean isValid()
\r
\r
/**
\r
* Method marshal
\r
\r
/**
\r
* Method marshal
\r
- *
\r
- *
\r
- *
\r
+ *
\r
+ *
\r
+ *
\r
* @param out
\r
*/
\r
public void marshal(java.io.Writer out)
\r
* @param out
\r
*/
\r
public void marshal(java.io.Writer out)
\r
- throws org.exolab.castor.xml.MarshalException,
\r
- org.exolab.castor.xml.ValidationException
\r
+ throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException
\r
{
\r
{
\r
+
\r
Marshaller.marshal(this, out);
\r
Marshaller.marshal(this, out);
\r
- }
\r
-
\r
- //-- void marshal(java.io.Writer)
\r
+ } //-- void marshal(java.io.Writer)
\r
\r
/**
\r
* Method marshal
\r
\r
/**
\r
* Method marshal
\r
- *
\r
- *
\r
- *
\r
+ *
\r
+ *
\r
+ *
\r
* @param handler
\r
*/
\r
public void marshal(org.xml.sax.ContentHandler handler)
\r
* @param handler
\r
*/
\r
public void marshal(org.xml.sax.ContentHandler handler)
\r
- throws java.io.IOException, org.exolab.castor.xml.MarshalException,
\r
- org.exolab.castor.xml.ValidationException
\r
+ throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException
\r
{
\r
{
\r
+
\r
Marshaller.marshal(this, handler);
\r
Marshaller.marshal(this, handler);
\r
- }
\r
-
\r
- //-- void marshal(org.xml.sax.ContentHandler)
\r
+ } //-- void marshal(org.xml.sax.ContentHandler)
\r
\r
/**
\r
* Sets the value of field 'description'.
\r
\r
/**
\r
* Sets the value of field 'description'.
\r
- *
\r
+ *
\r
* @param description the value of field 'description'.
\r
*/
\r
public void setDescription(java.lang.String description)
\r
{
\r
this._description = description;
\r
* @param description the value of field 'description'.
\r
*/
\r
public void setDescription(java.lang.String description)
\r
{
\r
this._description = description;
\r
- }
\r
-
\r
- //-- void setDescription(java.lang.String)
\r
+ } //-- void setDescription(java.lang.String)
\r
\r
/**
\r
* Sets the value of field 'displayCharacter'.
\r
\r
/**
\r
* Sets the value of field 'displayCharacter'.
\r
- *
\r
+ *
\r
* @param displayCharacter the value of field 'displayCharacter'
\r
*/
\r
public void setDisplayCharacter(java.lang.String displayCharacter)
\r
{
\r
this._displayCharacter = displayCharacter;
\r
* @param displayCharacter the value of field 'displayCharacter'
\r
*/
\r
public void setDisplayCharacter(java.lang.String displayCharacter)
\r
{
\r
this._displayCharacter = displayCharacter;
\r
- }
\r
-
\r
- //-- void setDisplayCharacter(java.lang.String)
\r
+ } //-- void setDisplayCharacter(java.lang.String)
\r
\r
/**
\r
* Sets the value of field 'position'.
\r
\r
/**
\r
* Sets the value of field 'position'.
\r
- *
\r
+ *
\r
* @param position the value of field 'position'.
\r
*/
\r
public void setPosition(int position)
\r
{
\r
this._position = position;
\r
this._has_position = true;
\r
* @param position the value of field 'position'.
\r
*/
\r
public void setPosition(int position)
\r
{
\r
this._position = position;
\r
this._has_position = true;
\r
- }
\r
-
\r
- //-- void setPosition(int)
\r
+ } //-- void setPosition(int)
\r
\r
/**
\r
* Sets the value of field 'secondaryStructure'.
\r
\r
/**
\r
* Sets the value of field 'secondaryStructure'.
\r
- *
\r
+ *
\r
* @param secondaryStructure the value of field
\r
* 'secondaryStructure'.
\r
*/
\r
public void setSecondaryStructure(java.lang.String secondaryStructure)
\r
{
\r
this._secondaryStructure = secondaryStructure;
\r
* @param secondaryStructure the value of field
\r
* 'secondaryStructure'.
\r
*/
\r
public void setSecondaryStructure(java.lang.String secondaryStructure)
\r
{
\r
this._secondaryStructure = secondaryStructure;
\r
- }
\r
-
\r
- //-- void setSecondaryStructure(java.lang.String)
\r
+ } //-- void setSecondaryStructure(java.lang.String)
\r
\r
/**
\r
* Sets the value of field 'value'.
\r
\r
/**
\r
* Sets the value of field 'value'.
\r
- *
\r
+ *
\r
* @param value the value of field 'value'.
\r
*/
\r
public void setValue(float value)
\r
{
\r
this._value = value;
\r
this._has_value = true;
\r
* @param value the value of field 'value'.
\r
*/
\r
public void setValue(float value)
\r
{
\r
this._value = value;
\r
this._has_value = true;
\r
- }
\r
-
\r
- //-- void setValue(float)
\r
+ } //-- void setValue(float)
\r
\r
/**
\r
* Method unmarshal
\r
\r
/**
\r
* Method unmarshal
\r
- *
\r
- *
\r
- *
\r
+ *
\r
+ *
\r
+ *
\r
* @param reader
\r
* @return Object
\r
*/
\r
public static java.lang.Object unmarshal(java.io.Reader reader)
\r
* @param reader
\r
* @return Object
\r
*/
\r
public static java.lang.Object unmarshal(java.io.Reader reader)
\r
- throws org.exolab.castor.xml.MarshalException,
\r
- org.exolab.castor.xml.ValidationException
\r
+ throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException
\r
{
\r
{
\r
- return (jalview.binding.AnnotationElement) Unmarshaller.unmarshal(jalview.binding.AnnotationElement.class,
\r
- reader);
\r
- }
\r
-
\r
- //-- java.lang.Object unmarshal(java.io.Reader)
\r
+ return (jalview.binding.AnnotationElement) Unmarshaller.unmarshal(jalview.binding.AnnotationElement.class, reader);
\r
+ } //-- java.lang.Object unmarshal(java.io.Reader)
\r
\r
/**
\r
* Method validate
\r
\r
/**
\r
* Method validate
\r
- *
\r
+ *
\r
*/
\r
*/
\r
- public void validate() throws org.exolab.castor.xml.ValidationException
\r
+ public void validate()
\r
+ throws org.exolab.castor.xml.ValidationException
\r
{
\r
org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();
\r
validator.validate(this);
\r
{
\r
org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();
\r
validator.validate(this);
\r
- }
\r
+ } //-- void validate()
\r
\r
\r
- //-- void validate()
\r
}
\r
}
\r