-public class Residue implements java.io.Serializable {\r
-\r
-\r
- //--------------------------/\r
- //- Class/Member Variables -/\r
- //--------------------------/\r
-\r
- /**\r
- * Field _name\r
- */\r
- private java.lang.String _name;\r
-\r
- /**\r
- * Field _RGB\r
- */\r
- private int _RGB;\r
-\r
- /**\r
- * keeps track of state for field: _RGB\r
- */\r
- private boolean _has_RGB;\r
-\r
-\r
- //----------------/\r
- //- Constructors -/\r
- //----------------/\r
-\r
- public Residue() {\r
- super();\r
- } //-- jalview.binding.Residue()\r
-\r
-\r
- //-----------/\r
- //- Methods -/\r
- //-----------/\r
-\r
- /**\r
- * Method deleteRGB\r
- * \r
- */\r
- public void deleteRGB()\r
- {\r
- this._has_RGB= false;\r
- } //-- void deleteRGB() \r
-\r
- /**\r
- * Returns the value of field 'name'.\r
- * \r
- * @return String\r
- * @return the value of field 'name'.\r
- */\r
- public java.lang.String getName()\r
- {\r
- return this._name;\r
- } //-- java.lang.String getName() \r
-\r
- /**\r
- * Returns the value of field 'RGB'.\r
- * \r
- * @return int\r
- * @return the value of field 'RGB'.\r
- */\r
- public int getRGB()\r
- {\r
- return this._RGB;\r
- } //-- int getRGB() \r
-\r
- /**\r
- * Method hasRGB\r
- * \r
- * \r
- * \r
- * @return boolean\r
- */\r
- public boolean hasRGB()\r
- {\r
- return this._has_RGB;\r
- } //-- boolean hasRGB() \r
-\r
- /**\r
- * Method isValid\r
- * \r
- * \r
- * \r
- * @return boolean\r
- */\r
- public boolean isValid()\r
- {\r
- try {\r
- validate();\r
- }\r
- catch (org.exolab.castor.xml.ValidationException vex) {\r
- return false;\r
- }\r
- return true;\r
- } //-- boolean isValid() \r
-\r
- /**\r
- * Method marshal\r
- * \r
- * \r
- * \r
- * @param out\r
- */\r
- public void marshal(java.io.Writer out)\r
- throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException\r
- {\r
- \r
- Marshaller.marshal(this, out);\r
- } //-- void marshal(java.io.Writer) \r
-\r
- /**\r
- * Method marshal\r
- * \r
- * \r
- * \r
- * @param handler\r
- */\r
- public void marshal(org.xml.sax.ContentHandler handler)\r
- throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException\r
- {\r
- \r
- Marshaller.marshal(this, handler);\r
- } //-- void marshal(org.xml.sax.ContentHandler) \r
-\r
- /**\r
- * Sets the value of field 'name'.\r
- * \r
- * @param name the value of field 'name'.\r
- */\r
- public void setName(java.lang.String name)\r
- {\r
- this._name = name;\r
- } //-- void setName(java.lang.String) \r
-\r
- /**\r
- * Sets the value of field 'RGB'.\r
- * \r
- * @param RGB the value of field 'RGB'.\r
- */\r
- public void setRGB(int RGB)\r
- {\r
- this._RGB = RGB;\r
- this._has_RGB = true;\r
- } //-- void setRGB(int) \r
-\r
- /**\r
- * Method unmarshal\r
- * \r
- * \r
- * \r
- * @param reader\r
- * @return Object\r
- */\r
- public static java.lang.Object unmarshal(java.io.Reader reader)\r
- throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException\r
+public class Residue\r
+ implements java.io.Serializable\r
+{\r
+\r
+ //--------------------------/\r
+ //- Class/Member Variables -/\r
+ //--------------------------/\r
+\r
+ /**\r
+ * Field _name\r
+ */\r
+ private java.lang.String _name;\r
+\r
+ /**\r
+ * Field _RGB\r
+ */\r
+ private int _RGB;\r
+\r
+ /**\r
+ * keeps track of state for field: _RGB\r
+ */\r
+ private boolean _has_RGB;\r
+\r
+ //----------------/\r
+ //- Constructors -/\r
+ //----------------/\r
+\r
+ public Residue()\r
+ {\r
+ super();\r
+ } //-- jalview.binding.Residue()\r
+\r
+ //-----------/\r
+ //- Methods -/\r
+ //-----------/\r
+\r
+ /**\r
+ * Method deleteRGB\r
+ *\r
+ */\r
+ public void deleteRGB()\r
+ {\r
+ this._has_RGB = false;\r
+ } //-- void deleteRGB()\r
+\r
+ /**\r
+ * Returns the value of field 'name'.\r
+ *\r
+ * @return String\r
+ * @return the value of field 'name'.\r
+ */\r
+ public java.lang.String getName()\r
+ {\r
+ return this._name;\r
+ } //-- java.lang.String getName()\r
+\r
+ /**\r
+ * Returns the value of field 'RGB'.\r
+ *\r
+ * @return int\r
+ * @return the value of field 'RGB'.\r
+ */\r
+ public int getRGB()\r
+ {\r
+ return this._RGB;\r
+ } //-- int getRGB()\r
+\r
+ /**\r
+ * Method hasRGB\r
+ *\r
+ *\r
+ *\r
+ * @return boolean\r
+ */\r
+ public boolean hasRGB()\r
+ {\r
+ return this._has_RGB;\r
+ } //-- boolean hasRGB()\r
+\r
+ /**\r
+ * Method isValid\r
+ *\r
+ *\r
+ *\r
+ * @return boolean\r
+ */\r
+ public boolean isValid()\r
+ {\r
+ try\r