- this.command = command;
- this.seqs = seqs;
- this.position = position;
- this.number = number;
- this.al = al;
- this.gapChar = al.getGapCharacter();
- string = new char[seqs.length][];
- for (int i = 0; i < seqs.length; i++)
+ this.command = cmd;
+ this.seqs = sqs;
+ this.position = pos;
+ this.number = count;
+ this.al = align;
+ this.gapChar = align.getGapCharacter();
+ string = new char[sqs.length][];
+ for (int i = 0; i < sqs.length; i++)