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JAL-2629 adjust log parameter slightly and reduce granularity
[jalview.git]
/
src
/
jalview
/
commands
/
RemoveGapColCommand.java
diff --git
a/src/jalview/commands/RemoveGapColCommand.java
b/src/jalview/commands/RemoveGapColCommand.java
index
6172ce8
..
3266874
100644
(file)
--- a/
src/jalview/commands/RemoveGapColCommand.java
+++ b/
src/jalview/commands/RemoveGapColCommand.java
@@
-1,6
+1,6
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
*
* This file is part of Jalview.
*
*
* This file is part of Jalview.
*
@@
-39,7
+39,8
@@
package jalview.commands;
* Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
*/
* Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
*/
-import jalview.datamodel.*;
+import jalview.datamodel.AlignmentI;
+import jalview.datamodel.SequenceI;
public class RemoveGapColCommand extends EditCommand
{
public class RemoveGapColCommand extends EditCommand
{
@@
-55,7
+56,7
@@
public class RemoveGapColCommand extends EditCommand
int startCol = -1, endCol = -1;
columnsDeleted = 0;
int startCol = -1, endCol = -1;
columnsDeleted = 0;
- edits = new Edit[0];
+ clearEdits();
boolean delete = true;
for (int i = start; i <= end; i++)
boolean delete = true;
for (int i = start; i <= end; i++)
@@
-86,8
+87,8
@@
public class RemoveGapColCommand extends EditCommand
if (!delete && startCol > -1)
{
if (!delete && startCol > -1)
{
- this.appendEdit(DELETE_GAP, seqs, startCol - columnsDeleted, endCol
- - startCol, al, false, null);
+ this.appendEdit(Action.DELETE_GAP, seqs, startCol - columnsDeleted,
+ endCol - startCol, al, false, null);
columnsDeleted += (endCol - startCol);
startCol = -1;
columnsDeleted += (endCol - startCol);
startCol = -1;
@@
-100,8
+101,8
@@
public class RemoveGapColCommand extends EditCommand
// This is for empty columns at the
// end of the alignment
// This is for empty columns at the
// end of the alignment
- this.appendEdit(DELETE_GAP, seqs, startCol - columnsDeleted, end
- - startCol + 1, al, false, null);
+ this.appendEdit(Action.DELETE_GAP, seqs, startCol - columnsDeleted,
+ end - startCol + 1, al, false, null);
columnsDeleted += (end - startCol + 1);
}
columnsDeleted += (end - startCol + 1);
}