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Don't parse input id, leave it as it is
[jalview.git]
/
src
/
jalview
/
datamodel
/
Alignment.java
diff --git
a/src/jalview/datamodel/Alignment.java
b/src/jalview/datamodel/Alignment.java
index
d945ec6
..
3a1b44a
100755
(executable)
--- a/
src/jalview/datamodel/Alignment.java
+++ b/
src/jalview/datamodel/Alignment.java
@@
-458,11
+458,9
@@
public class Alignment implements AlignmentI
\r
while (i < sequences.size())
\r
{
\r
\r
while (i < sequences.size())
\r
{
\r
- SequenceI s = getSequenceAt(i);
\r
-
\r
- if (s.getName().equals(name))
\r
+ if (getSequenceAt(i).getName().equals(name))
\r
{
\r
{
\r
- return s;
\r
+ return getSequenceAt(i);
\r
}
\r
\r
i++;
\r
}
\r
\r
i++;
\r
@@
-705,7
+703,7
@@
public class Alignment implements AlignmentI
for (int i = 0; i < getHeight(); i++)
\r
{
\r
\r
for (int i = 0; i < getHeight(); i++)
\r
{
\r
\r
- seqs[i] = new Sequence(getSequenceAt(i).getName(),
\r
+ seqs[i] = new Sequence(getSequenceAt(i).getDisplayId(true),
\r
AlignSeq.extractGaps(
\r
jalview.util.Comparison.GapChars,
\r
getSequenceAt(i).getSequence()
\r
AlignSeq.extractGaps(
\r
jalview.util.Comparison.GapChars,
\r
getSequenceAt(i).getSequence()
\r