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alignment from seqCigars will correctly mark deleted residues as
[jalview.git]
/
src
/
jalview
/
datamodel
/
Alignment.java
diff --git
a/src/jalview/datamodel/Alignment.java
b/src/jalview/datamodel/Alignment.java
index
d67592a
..
507102e
100755
(executable)
--- a/
src/jalview/datamodel/Alignment.java
+++ b/
src/jalview/datamodel/Alignment.java
@@
-70,7
+70,7
@@
public class Alignment implements AlignmentI
* @param seqs SeqCigar[]
*/
public Alignment(SeqCigar[] alseqs) {
* @param seqs SeqCigar[]
*/
public Alignment(SeqCigar[] alseqs) {
- SequenceI[] seqs = SeqCigar.createAlignmentSequences(alseqs, gapCharacter, new ColumnSelection());
+ SequenceI[] seqs = SeqCigar.createAlignmentSequences(alseqs, gapCharacter, new ColumnSelection(), null);
initAlignment(seqs);
}
/**
initAlignment(seqs);
}
/**