git://source.jalview.org
/
jalview.git
/ blobdiff
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
shortlog
|
log
|
commit
|
commitdiff
|
tree
raw
|
inline
| side by side
JAL-2349 fix off by one when resolving columns for sequence associated contact matrix
[jalview.git]
/
src
/
jalview
/
datamodel
/
Alignment.java
diff --git
a/src/jalview/datamodel/Alignment.java
b/src/jalview/datamodel/Alignment.java
index
321eee3
..
517a6dd
100755
(executable)
--- a/
src/jalview/datamodel/Alignment.java
+++ b/
src/jalview/datamodel/Alignment.java
@@
-2080,10
+2080,10
@@
public class Alignment implements AlignmentI, AutoCloseable
if (spos >= _aa.sequenceRef.getStart()
&& spos <= 1 + _aa.sequenceRef.getEnd())
{
if (spos >= _aa.sequenceRef.getStart()
&& spos <= 1 + _aa.sequenceRef.getEnd())
{
- cl = _aa.sequenceRef.getContactListFor(_aa, spos);
+ cl = _aa.sequenceRef.getContactListFor(_aa, spos-_aa.sequenceRef.getStart());
if (cl == null && _aa.sequenceRef.getDatasetSequence() != null)
{
if (cl == null && _aa.sequenceRef.getDatasetSequence() != null)
{
- _aa.sequenceRef.getDatasetSequence().getContactListFor(_aa, spos);
+ _aa.sequenceRef.getDatasetSequence().getContactListFor(_aa, spos-_aa.sequenceRef.getStart());
}
}
}
}
}
}