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remove all representative seqs on delete groups
[jalview.git]
/
src
/
jalview
/
datamodel
/
Alignment.java
diff --git
a/src/jalview/datamodel/Alignment.java
b/src/jalview/datamodel/Alignment.java
index
c839271
..
86c140f
100755
(executable)
--- a/
src/jalview/datamodel/Alignment.java
+++ b/
src/jalview/datamodel/Alignment.java
@@
-394,7
+394,8
@@
public class Alignment implements AlignmentI
while (i < sequences.size())
{
while (i < sequences.size())
{
- SequenceI s = getSequenceAt(i);
+ Sequence s = (Sequence)getSequenceAt(i);
+ s.hiddenSequences = null;
s.setColor(java.awt.Color.white);
i++;
}
s.setColor(java.awt.Color.white);
i++;
}
@@
-405,6
+406,9
@@
public class Alignment implements AlignmentI
{
if (groups.contains(g))
{
{
if (groups.contains(g))
{
+ //remove any hidden representatives
+ // for(int i=0; i<g.getsiz
+ // g.getSequences()
groups.removeElement(g);
}
}
groups.removeElement(g);
}
}