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set gap char modified
[jalview.git]
/
src
/
jalview
/
datamodel
/
Alignment.java
diff --git
a/src/jalview/datamodel/Alignment.java
b/src/jalview/datamodel/Alignment.java
index
10e2766
..
e513e59
100755
(executable)
--- a/
src/jalview/datamodel/Alignment.java
+++ b/
src/jalview/datamodel/Alignment.java
@@
-481,12
+481,12
@@
public class Alignment implements AlignmentI
\r
public void setGapCharacter(char gc)
\r
{
\r
\r
public void setGapCharacter(char gc)
\r
{
\r
- char old = getGapCharacter();
\r
gapCharacter = gc;
\r
for (int i=0; i < sequences.size(); i++)
\r
{
\r
Sequence seq = (Sequence)sequences.elementAt(i);
\r
gapCharacter = gc;
\r
for (int i=0; i < sequences.size(); i++)
\r
{
\r
Sequence seq = (Sequence)sequences.elementAt(i);
\r
- seq.sequence = seq.sequence.replace(old, gc);
\r
+ seq.sequence = seq.sequence.replace('.', gc);
\r
+ seq.sequence = seq.sequence.replace('-', gc);
\r
}
\r
}
\r
\r
}
\r
}
\r
\r