+
+ /**
+ * convenience method to check for the 'CONTACT_MAP_NOGROUPS' property for this alignment annotation row
+ * @return true if no CONTACT_MAP_NOGROUPS property is found, or it is set to ""
+ */
+ public boolean isShowGroupsForContactMatrix()
+ {
+ return getProperty(AlignmentAnnotation.CONTACT_MAP_NOGROUPS)==null || "".equals(getProperty(AlignmentAnnotation.CONTACT_MAP_NOGROUPS));
+ }
+ /**
+ * set the 'CONTACT_MAP_NOGROUPS' property for this alignment annotation row
+ * @see isShowGroupsForContactMatrix
+ */
+ public void setShowGroupsForContactMatrix(boolean showGroups)
+ {
+ setProperty(AlignmentAnnotation.CONTACT_MAP_NOGROUPS, showGroups ? "" : "nogroups");
+ }
+