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[jalview.git]
/
src
/
jalview
/
datamodel
/
AlignmentOrder.java
diff --git
a/src/jalview/datamodel/AlignmentOrder.java
b/src/jalview/datamodel/AlignmentOrder.java
index
9a2ed8c
..
639dd47
100755
(executable)
--- a/
src/jalview/datamodel/AlignmentOrder.java
+++ b/
src/jalview/datamodel/AlignmentOrder.java
@@
-1,6
+1,6
@@
/*
\r
* Jalview - A Sequence Alignment Editor and Viewer
\r
/*
\r
* Jalview - A Sequence Alignment Editor and Viewer
\r
- * Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
\r
+ * Copyright (C) 2006 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
\r
*
\r
* This program is free software; you can redistribute it and/or
\r
* modify it under the terms of the GNU General Public License
\r
*
\r
* This program is free software; you can redistribute it and/or
\r
* modify it under the terms of the GNU General Public License
\r
@@
-171,7
+171,7
@@
public class AlignmentOrder
* replaces oldref with newref in the alignment order.
\r
* @param oldref
\r
* @param newref
\r
* replaces oldref with newref in the alignment order.
\r
* @param oldref
\r
* @param newref
\r
- * @return
\r
+ * @return true if oldref was contained in order and replaced with newref
\r
*/
\r
public boolean updateSequence(SequenceI oldref, SequenceI newref) {
\r
int found=Order.indexOf(oldref);
\r
*/
\r
public boolean updateSequence(SequenceI oldref, SequenceI newref) {
\r
int found=Order.indexOf(oldref);
\r