+
+ /**
+ * Creates a new Annotation object.
+ *
+ * @param displayChar DOCUMENT ME!
+ * @param desc DOCUMENT ME!
+ * @param ss DOCUMENT ME!
+ * @param val DOCUMENT ME!
+ * @param colour DOCUMENT ME!
+ */
+ public Annotation(String displayChar, String desc, char ss, float val,
+ Color colour)
+ {
+ this(displayChar, desc, ss, val);
+ this.colour = colour;
+ }
+ /**
+ * Copy constructor
+ * New annotation takes on the same (or duplicated) attributes as the given template
+ * @param that template annotation
+ */
+ public Annotation(Annotation that) {
+ if (that==null || this==that)
+ {
+ return;
+ }
+ if (that.displayCharacter!=null)
+ displayCharacter = new String(that.displayCharacter);
+ if (that.description!=null)
+ description = new String(that.description);
+ secondaryStructure = that.secondaryStructure;
+ value = that.value;
+ colour = that.colour;
+ }